Takeda

Pharmaceutical

SeniorDirector,ComputationalChemistry

$212–333k Boston, Massachusetts, United States FULL TIME Remote Friendly
Market Sentiment
HIGH DEMAND

Neural analysis suggests this role is
optimal for Director candidates.

The Brief

“Senior Director, Computational Chemistry at Takeda. Skills: generative AI, computational chemistry, ML models, drug discovery. Drive in silico molecular design. Leverage predictive models”

What You'll Achieve.

delivering differentiated medicines to the clinic at speed and cost; deliver candidates to the clinic at industry leading speed and success rates; power rapid DMTA cycles — directly enabling the speed and precision that define the AIRx incubator; shape what gets synthesized, what gets deprioritized, and ultimately what reaches the clinic; increase team speed and reproducibility

Industry & Context.

Pharmaceutical

What They're Looking For.

Must Have

PhD in computational chemistry, cheminformatics, biophysics, or closely related discipline, 12–15+ years of drug discovery experience with demonstrated track record of computational impact on programs, Proficiency across computational tools: molecular docking, MD simulation, FEP, QSAR/ADMET modeling, coding skills (Python required), experience building and deploying ML models in a drug discovery context, Experience with structure-based drug ability to interpret crystallography or cryo-EM data

Nice to Have

Experience applying generative AI or large language models to molecular design preferred

What You'll Do.

Drive in silico molecular design

Leverage predictive models

Apply generative chemistry to power rapid DMTA cycles

Design and prioritize chemical matter using generative AI

structure-based design

free energy perturbation

and predictive ML models

Lead and oversee virtual screening campaigns

and selectivity assessments

Contribute to building and refining AI/ML model training datasets from AIRx experimental outputs

Develop and maintain computational workflows that increase team speed and reproducibility

Interpret and integrate structural biology data (X-ray

cryo-EM) into computational design strategies

Communicate complex computational findings clearly to cross-disciplinary colleagues and governance forums

Stay current with advances in generative AI

protein structure prediction

and ML proactively apply new approaches

How You'll Work.

Team & Collaboration

Partner closely with Medicinal Chemists to translate computational outputs into actionable synthesis challenge and be challenged in equal measure; Communicate complex computational findings clearly to cross-disciplinary colleagues and governance forums

Communication Scope

Communicate complex computational findings clearly to cross-disciplinary colleagues and governance forums

Full Job Description

By clicking the “Apply” button, I understand that my employment application process with Takeda will commence and that the information I provide in my application will be processed in line with Takeda’s [Privacy Notice](https://jobs.takeda.com/privacynotice) and [Terms of Use](https://www.takeda.com/terms-and-conditions/). I further attest that all information I submit in my employment application is true to the best of my knowledge. ## **Job Description** **Senior Director, Computational Chemistry** Takeda Research is constructing the Discovery Automation & Robotics (DAR) group built on AI, automation, new ways of working, and talent with the singular vision of delivering differentiated medicines to the clinic at speed and cost. To catalyze these efforts, Takeda is creating two complementary units: AI Research Accelerator (AIRx) and The Discovery Automation & Robotics (DAR) group. AIRx will consist of a dedicated group of experienced drug hunters with the autonomy of a biotech and the resources of a leading pharmaceutical company. It is designed to incubate the future AI-powered operating models and deliver candidates to the clinic at industry leading speed and success rates. Purpose Reporting to the Head of AIRx, the AIRx Computational Chemist sits at the scientific heart of AIRx's AI-first operating model. This role drives in silico molecular design, leverages predictive models, and applies generative chemistry to power rapid DMTA cycles — directly enabling the speed and precision that define the AIRx incubator In AIRx, computational chemistry is a first-order decision-making function — generative proposals from this role directly shape what gets synthesized, what gets deprioritized, and ultimately what reaches the clinic. The role is deeply hands-on, with a unique opportunity to directly shape candidates that advance to the clinic through close collaboration with the wider AIRx design team. Accountabilities * Apply generative AI, structure-based design, free ene

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